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Manual
Software
Cluster status
Mirror at CIPRES
RAxML BlackBox
Data
Paste your sequence alignment
Must be in
Phylip
format, or convertible by
readseq
or upload a file
Gamma model of rate heterogeneity
If not checked, CAT model will be used
Protein sequences
If not checked, dna sequences will be assumed
Outgroup
The name of one or more (comma-separated) outgroup(s) can be specified
Constraint
This option allows you to specify an incomplete or comprehensive multifurcating constraint tree in NEWICK format. More help
here
.
Binary backbone
This option allows you to pass a binary/bifurcating constraint/backbone tree in NEWICK format. More help
here
.
Substitution Matrix
Substitution matrix
DAYHOFF
DCMUT
JTT
MTREV
WAG
RTREV
CPREV
VT
BLOSUM62
MTMAM
Use empirical base frequencies
Model
Use a mixed/partioned model?
You may provide an alignment partition file. More help
here
Per gene branch length optimization
Maximum likelihood search
Will search for best-scoring tree after the bootstraps
Estimate proportion of invariable sites
Notification
Email
Enter your email if you want to be notified upon job completion
When publishing results obtained via the web-server please cite:
A. Stamatakis, P. Hoover, J. Rougemont
A Rapid Bootstrap Algorithm for the RAxML Web-Servers,
Systematic Biology, 75(5): 758-771, 2008